Cunningham hinted that performance was a possible reason for player omissions.
Wales endured a torrid Six Nations before salvaging a win against Italy to set up a WXV2 play-off against Spain that Wales also won.
“We’ve given honest feedback to our players with regards to a couple of areas, where we feel they are,” he said.
“With regards to their level of condition at the moment, we want to give players some more time to work on that.
“Also, we want to give players time to reflect, step away and focus on themselves a bit more, areas of their game.”
Experienced scrum-half Bevan has been chosen to lead the side for the first time in Jones’ absence.
“Hannah has been unbelievable over the Six Nations campaign, taking a lot on, both on the field and off the field,” added Cunningham.
“It’s an opportunity for her to find her feet again, enjoy the rugby, do what she’s good at.
“She cares deeply about this team, cares deeply about her performance and how she holds herself. Her professionalism is exceptional, she’s a huge part of this team whether she’s on the field or in a different role.
“The person comes first and we’re going to build back up ready for WXV and it’s just taking those smaller steps towards that.”